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DC Field | Value | Language |
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dc.contributor.author | Singh, Ajeet | - |
dc.contributor.author | AT, Vivek | - |
dc.contributor.author | Gupta, Kanika | - |
dc.contributor.author | Sharma, Shruti | - |
dc.contributor.author | Kumar, Shailesh | - |
dc.date.accessioned | 2023-06-05T06:49:24Z | - |
dc.date.available | 2023-06-05T06:49:24Z | - |
dc.date.issued | 2023 | - |
dc.identifier.citation | Computational and Structural Biotechnology Journal, 21: 3032-3044 | en_US |
dc.identifier.issn | 2001-0370 | - |
dc.identifier.other | https://doi.org/10.1016/j.csbj.2023.05.011 | - |
dc.identifier.uri | https://www.sciencedirect.com/science/article/pii/S2001037023001939 | - |
dc.identifier.uri | http://223.31.159.10:8080/jspui/handle/123456789/1486 | - |
dc.description | Accepted date: 11 May 2023 | en_US |
dc.description.abstract | Allotetraploid cotton plants Gossypium hirsutum and Gossypium barbadense have been widely cultivated for their natural, renewable textile fibres. Even though ncRNAs in domesticated cotton species have been extensively studied, systematic identification and annotation of lncRNAs and miRNAs expressed in various tissues and developmental stages under various biological contexts are limited. This influences the comprehension of their functions and future research on these cotton species. Here, we report high confidence lncRNAs and miRNA collection from G. hirsutum accession and G. barbadense accession using large-scale RNA-seq and small RNA-seq datasets incorporated into a user-friendly database, CoNCRAtlas. This database provides a wide range and depth of lncRNA and miRNA annotation based on the systematic integration of extensive annotations such as expression patterns derived from transcriptome data analysis in thousands of samples, as well as multi-omics annotations. We assume this comprehensive resource will accelerate evolutionary and functional studies in ncRNAs and inform future breeding programs for cotton improvement. CoNCRAtlas is accessible at http://www.nipgr.ac.in/CoNCRAtlas/. | en_US |
dc.description.sponsorship | A.S. and A.T.V. gratefully acknowledge the Council of Scientific and Industrial Research and the Department of Biotechnology, respectively, for providing research fellowships. We would also like to thank Dr. Citu for her invaluable assistance with the WGCNA analysis. The authors extend their gratitude to the DBT e-Library Consortium (DeLCON) for providing access to e-material and to the Computational Biology & Bioinformatics Facility (CBBF) of the National Institute of Plant Genome Research (NIPGR) for their support. SK acknowledges the BT/PR40146/BTIS/137/4/2020 project grant from the Department of Biotechnology (DBT), Government of India. | en_US |
dc.language.iso | en_US | en_US |
dc.publisher | Elsevier B.V. | en_US |
dc.subject | Non-coding RNAs | en_US |
dc.subject | MiRNA | en_US |
dc.subject | LncRNA | en_US |
dc.subject | Cotton | en_US |
dc.subject | Gossypium hirsutum | en_US |
dc.subject | Gossypium barbadense | en_US |
dc.title | Long non-coding RNA and microRNA landscape of two major domesticated cotton species | en_US |
dc.type | Article | en_US |
Appears in Collections: | Institutional Publications |
Files in This Item:
File | Description | Size | Format | |
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Kumar Shai_2023_3.pdf | 12.92 MB | Adobe PDF | View/Open |
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