Please use this identifier to cite or link to this item: http://223.31.159.10:8080/jspui/handle/123456789/644
Title: Gel-based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum L.) augments the comprehensive data sets of membrane protein repertoire
Authors: Barua, Pragya
Subba, Pratigya
Lande, Nilesh Vikram
Mangalaparthi, Kiran K.
Prasad, T.S. Keshava
Chakraborty, Subhra
Chakraborty, Niranjan
Keywords: Food legume
Hydropathy indices
LC-MS/MS analysis
Plasma membrane proteome
Posttranslational modifications
Trans-membrane domain
Issue Date: 2016
Publisher: Elsevier B.V.
Citation: J. Proteomics, 143: 199-208
Abstract: Plasma membrane (PM) encompasses total cellular contents, serving as semi-porous barrier to cell exterior. This living barrier regulates all cellular exchanges in a spatio-temporal fashion. Most of the essential tasks of PMs including molecular transport, cell-cell interaction and signal transduction are carried out by their proteinaceous components, which make the PM protein repertoire to be diverse and dynamic. Here, we report the systematic analysis of PM proteome of a food legume, chickpea and develop a PM proteome reference map. Proteins were extracted from highly enriched PM fraction of four-week-old seedlings using aqueous two-phase partitioning. To address a population of PM proteins that is as comprehensive as possible, both gel-based and gel-free approaches were employed, which led to the identification of a set of 2732 non-redundant proteins. These included both integral proteins having bilayer spanning domains as well as peripheral proteins associated with PMs through posttranslational modifications or protein-protein interactions. Further, the proteins were subjected to various in-silico analyses and functionally classified based on their gene ontology. Finally an inventory of the complete set of PM proteins, identified in several monocot and dicot species, was created for comparative study with the generated PM protein dataset of chickpea.
Description: Accepted date: 18 April 2016
URI: http://172.16.0.77:8080/jspui/handle/123456789/644
ISSN: 1874-3919
Appears in Collections:Institutional Publications

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